Academic Library
Curated Bioinformatics Resources
A hand-picked selection of high-impact data sources, industry-standard tools, and verified tutorials used in professional research labs.
Data Sources
Gene Expression Omnibus (GEO)
bothNIH repository for functional genomics data with over 100,000 bulk RNA-seq studies.
Genotype-Tissue Expression (GTEx)
bulkComprehensive atlas of gene expression across 54 human tissues from healthy individuals.
The Cancer Genome Atlas (TCGA)
bulkMulti-omics data from 33 cancer types including RNA-seq from tumor and normal samples.
Human Cell Atlas
single-cellComprehensive reference of human cell types with high-quality annotated single-cell datasets.
Tabula Sapiens
single-cellHuman single-cell transcriptomic atlas with 500,000+ cells across 24 tissues.
Analysis Tools
DESeq2
bulkGold standard for differential gene expression analysis in bulk RNA-seq data.
STAR Aligner
bothUltrafast universal RNA-seq aligner with splice-aware mapping capabilities.
Seurat
single-cellComprehensive toolkit for single-cell genomics analysis and visualization.
Scanpy
single-cellScalable toolkit for analyzing single-cell gene expression data.
Learning Materials
Bioconductor Workflows
bothStep-by-step tutorials for RNA-seq analysis using R/Bioconductor packages.
Single-cell Best Practices
single-cellComprehensive tutorial on current best practices in single-cell RNA-seq analysis.
Orchestrating Single-Cell Analysis
single-cellOnline book covering single-cell RNA-seq analysis with R/Bioconductor.
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