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Filter genes by minimum study coverage

Source: R/05_missing.R
mx_filter_coverage.Rd

Retains only genes present in at least min_studies studies. This is the simplest approach to handling missing genes and is applied automatically inside mx_meta via the min_studies argument.

Usage

mx_filter_coverage(de_results, min_studies = 2)

Arguments

de_results

A named list of data.frame objects from mx_de_all.

min_studies

Integer. Minimum number of studies a gene must appear in. Default: 2.

Value

The input list with each data.frame restricted to genes meeting the coverage threshold.

See also

mx_missing_summary, mx_impute

Examples

if (FALSE) { # \dontrun{
  de_results <- mx_filter_coverage(de_results, min_studies = 3)
} # }