Cross-study pathway heatmap — mx_pathway_heatmap • metaXpress

Creates a heatmap showing enrichment scores or -log10(padj) for top pathways across all studies.

Usage

mx_pathway_heatmap(pathway_results, top_n = 30, value = c("padj", "NES"))

Arguments

pathway_results: A list of per-study pathway enrichment data.frame objects, or a single data.frame from mx_pathway_meta.
top_n: Integer. Number of top pathways to display. Default: 30.
value: Character scalar. Value to display: "padj" (default) or "NES" (for GSEA results).

Value

A ggplot2 object.

See also

mx_pathway_meta

Examples

if (FALSE) { # \dontrun{
  mx_pathway_heatmap(result@pathway_result, top_n = 20)
} # }