Health Science Reports, 2026
Jubayer Hossain - Multiomics and Machine Learning
Multiomics · Cancer Genomics · Machine Learning
Jubayer Hossain
Multiomics scientist decoding cancer biology from public transcriptomic data.
I build reproducible computational workflows on public omics data — meta-analysing bulk RNA-Seq cohorts, constructing harmonised single-cell atlases, and applying machine learning to high-dimensional data for biomarker discovery.
I founded DeepBio Limited, a Dhaka-based AI and bioinformatics company, and CHIRAL Bangladesh, a non-profit research institute that has trained 3,000+ early-career researchers. I teach through DeepBio Academy and mentor students from raw sequencing data to published analysis.
Single-Cell
Spatial Transcriptomics
Cancer Genomics
Machine Learning
16 Publications
19 Talks
3,000+ Researchers trained
Selected work
Featured Research
BMC Genomics, 2025
A meta-analysis of public RNA-Seq data identifies conserved stress responses in rainbow trout
Read paper
Scientific Reports, 2025
Comprehensive bioinformatics analysis reveals prognostic significance and immunological roles of WNT gene family in breast cancer
Read paper
Scientific Reports, 2025
Pan-cancer analysis reveals immunological and prognostic significance of CCT5 in human tumors
Read paperNo matching items
Speaking
Talks & Presentations
2026
Single-Cell Transcriptomic and Network Pharmacology Insights into the Therapeutic Potential of Withania somnifera-Derived Phytochemicals Against Cisplatin-Resistant Ovarian Cancer
IEEE BECITHCON 2026
2026
Fezf2-Mediated Cortical Development: Multi-Omics Single-Cell Analysis
Network of Young Biotechnologists Bangladesh · Dhaka, Bangladesh
2025
Identification of Subtype-Specific Prognostic Biomarkers in Esophageal Carcinoma through Integrated Bioinformatics Analysis
9th BSM Annual Conference · University of Dhaka, Bangladesh
2025
Network-Driven Bioinformatics Approach Uncovers Prognostic Signatures and Therapeutic Targets in Pancreatic Ductal Adenocarcinoma
9th BSM Annual Conference · University of Dhaka, Bangladesh
2025
Bioinformatic Analysis of Transcriptomic Data Reveals Molecular Signatures Driving Colorectal Cancer
9th BSM Annual Conference · University of Dhaka, Bangladesh
2025
Comparative Transcriptomic Meta-Analysis Reveals Shared and Distinct Transcriptional Networks and Pathway Crosstalk in Hepatocellular Carcinoma for Biomarker and Therapeutic Target Identification
9th BSM Annual Conference · University of Dhaka, Bangladesh
2018
State the Art of Microbial Genome Analysis
Jagannath University · Dhaka, Bangladesh
2015
Computational Biology and Bioinformatics Research in Resource-Limited Settings: Strategies, Tools and Opportunities
Jagannath University Higher Study and Research Society · Dhaka, Bangladesh
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Tools & Tutorials
Featured Tools & Tutorials
Single-Cell Analysis with Python
Raw counts to biological insight with scanpy and the scverse ecosystem.
20+ lessons · 6 modules · Python →Nextflow and nf-core
Scalable, reproducible pipelines with DSL2, and how to contribute to nf-core.
15 lessons · 5 modules · DSL2 →TAM-Atlas
Tumour-associated macrophage heterogeneity across 8 cancers, ~640,000 cells, scVI-based.
Python · Scanpy · scVI-tools →AMR Drug Repurposing
Deep learning over ChEMBL bioactivity to find non-antibiotic drugs active against ESKAPE pathogens.
PyTorch · RDKit · SHAP →Publications
Recent Publications
Preventing the silent threat: A perspective on preparing Bangladesh for Human Metapneumovirus (HMPV)
Health Science Reports, 2025
Pan-cancer analysis reveals immunological and prognostic significance of CCT5 in human tumors
Scientific Reports, 2025
Young stroke in Bangladesh: Addressing rare cases with diagnostic challenges
Stroke and Vascular Neurology, 2025
Earlier Publications (10 more)
Clinical and hematological manifestation of dengue patients in 2022 outbreak
Health Science Reports, 2025
Urgent call for compulsory premarital screening for thalassemia prevention in Bangladesh
Orphanet Journal of Rare Diseases, 2024
Prevalence, antibiotic resistance pattern for bacteriuria from patients with UTIs
Health Science Reports, 2024
Food consumption patterns and sedentary behaviors among university students
Health Science Reports, 2024
Factors contributing to antibiotic misuse among parents in Dhaka City
Scientific Reports, 2024
Community engagement and social participation in dengue prevention
Health Science Reports, 2024
Health-related quality of life among thalassemia patients in Bangladesh (SF-36)
Scientific Reports, 2023
Knowledge and Attitudes towards Thalassemia among Public University Students
Microbial Bioactives, 2022
Perception of Students on Antibiotic Resistance and Prevention
European Journal of Biology and Biotechnology, 2022
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Updates
News
COL13A1 and COL23A1 identified as thyroid cancer biomarkers — Published in Health Science Reports. Read →
Rainbow trout RNA-Seq meta-analysis out in BMC Genomics — Conserved stress responses across four public datasets. Read →
WNT gene family in breast cancer published in Scientific Reports — Prognostic significance and immunological roles. Read →
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Training & mentorship
Open Programmes
Bioinformatics Mentorship Program
Raw sequencing data to a publication-ready manuscript, with one-to-one supervision.
Learn more →No-Code & Agentic AI
Automating literature review and omics analysis with agentic AI, without writing code.
Learn more →NextGen Drug Discovery with AI
How machine learning accelerates target identification, molecule design and virtual screening.
Learn more →GSA Bioinformatics Internship
Gain hands-on experience in bioinformatics with real-world projects and mentorship.
Learn more →AgamiAI - National AI Literacy Initiative
A national initiative to promote AI literacy and empower school and college students to leverage AI in their research and studies.
Learn more →School of Bioinformatics
Designed for school and college students, this program introduces bioinformatics concepts and practical skills.
Learn more →No matching items