Health Science Reports, 2026
Jubayer Hossain - Multiomics and Machine Learning
Multiomics · Cancer Genomics · Machine Learning
Jubayer Hossain
Multiomics scientist decoding cancer biology from public transcriptomic data.
I build reproducible computational workflows on public omics data — meta-analysing bulk RNA-Seq cohorts, constructing harmonised single-cell atlases, and applying machine learning to high-dimensional data for biomarker discovery.
I founded DeepBio Limited, a Dhaka-based AI and bioinformatics company, and CHIRAL Bangladesh, a non-profit research institute that has trained 3,000+ early-career researchers. I teach through DeepBio Academy and mentor students from raw sequencing data to published analysis.
Single-Cell
Spatial Transcriptomics
Cancer Genomics
Machine Learning
16 Publications
19 Talks
3,000+ Researchers trained
Selected work
Featured Research
BMC Genomics, 2025
A meta-analysis of public RNA-Seq data identifies conserved stress responses in rainbow trout
Read paper
Scientific Reports, 2025
Comprehensive bioinformatics analysis reveals prognostic significance and immunological roles of WNT gene family in breast cancer
Read paper
Scientific Reports, 2025
Pan-cancer analysis reveals immunological and prognostic significance of CCT5 in human tumors
Read paperNo matching items
Speaking
Talks & Presentations
2026
Single-Cell Transcriptomic and Network Pharmacology Insights into the Therapeutic Potential of Withania somnifera-Derived Phytochemicals Against Cisplatin-Resistant Ovarian Cancer
IEEE BECITHCON 2026
2026
Fezf2-Mediated Cortical Development: Multi-Omics Single-Cell Analysis
Network of Young Biotechnologists Bangladesh · Dhaka, Bangladesh
2025
Identification of Subtype-Specific Prognostic Biomarkers in Esophageal Carcinoma through Integrated Bioinformatics Analysis
9th BSM Annual Conference · University of Dhaka, Bangladesh
2025
Network-Driven Bioinformatics Approach Uncovers Prognostic Signatures and Therapeutic Targets in Pancreatic Ductal Adenocarcinoma
9th BSM Annual Conference · University of Dhaka, Bangladesh
2025
Bioinformatic Analysis of Transcriptomic Data Reveals Molecular Signatures Driving Colorectal Cancer
9th BSM Annual Conference · University of Dhaka, Bangladesh
2025
Comparative Transcriptomic Meta-Analysis Reveals Shared and Distinct Transcriptional Networks and Pathway Crosstalk in Hepatocellular Carcinoma for Biomarker and Therapeutic Target Identification
9th BSM Annual Conference · University of Dhaka, Bangladesh
2018
State the Art of Microbial Genome Analysis
Jagannath University · Dhaka, Bangladesh
2015
Computational Biology and Bioinformatics Research in Resource-Limited Settings: Strategies, Tools and Opportunities
Jagannath University Higher Study and Research Society · Dhaka, Bangladesh
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Tools & Tutorials
Featured Tools & Tutorials
Single-Cell Analysis with Python
Raw counts to biological insight with scanpy and the scverse ecosystem.
20+ lessons · 6 modules · Python →R for Research
Video lectures covering R programming fundamentals, data manipulation, statistical testing, and visualization for researchers.
Watch playlist →Machine Learning for Bioinformatics
Hands-on video tutorials applying machine learning techniques to biological and genomic datasets.
Watch playlist →RNA-Seq Analysis with R
Step-by-step video tutorials on bulk RNA-seq analysis using R and Bioconductor, from raw counts to biological interpretation.
Watch playlist →AI for Drug Discovery
Video series introducing AI-powered approaches to drug discovery, including toxicology modeling and structure-activity analysis.
Watch playlist →Cancer Bioinformatics
Video tutorials on cancer genomics analysis, covering TCGA data access, mutation analysis, survival modeling, and multi-omics integration.
Watch playlist →Academic Writing
Video lectures on scientific writing, manuscript preparation, and publishing in peer-reviewed journals.
Watch playlist →Python for Health Data Analytics
Video tutorials on using Python for health data analysis, covering data wrangling, visualization, and statistical methods for public health and clinical datasets.
Watch playlist →No matching items
Code & pipelines
Selected Projects
EWSAtlas: A Single-Cell Atlas of Ewing Sarcoma
Harmonised single-cell transcriptomics atlas of human Ewing sarcoma, integrating published tumour datasets into one reference.
GitHub →Hyperglycemia-Associated Cell-Specific Signatures in Liver and Kidney
Cell-type-resolved transcriptional signatures of hyperglycemic injury across hepatic and renal tissue.
View project →Cellular and Molecular Mechanisms of Alzheimer’s Disease
Single-cell and multi-omic dissection of the cell-type-specific programmes that drive Alzheimer’s disease pathology.
View project →No matching items
Publications
Recent Publications
Preventing the silent threat: A perspective on preparing Bangladesh for Human Metapneumovirus (HMPV)
Health Science Reports, 2025
Pan-cancer analysis reveals immunological and prognostic significance of CCT5 in human tumors
Scientific Reports, 2025
Young stroke in Bangladesh: Addressing rare cases with diagnostic challenges
Stroke and Vascular Neurology, 2025
Earlier Publications (10 more)
Clinical and hematological manifestation of dengue patients in 2022 outbreak
Health Science Reports, 2025
Urgent call for compulsory premarital screening for thalassemia prevention in Bangladesh
Orphanet Journal of Rare Diseases, 2024
Prevalence, antibiotic resistance pattern for bacteriuria from patients with UTIs
Health Science Reports, 2024
Food consumption patterns and sedentary behaviors among university students
Health Science Reports, 2024
Factors contributing to antibiotic misuse among parents in Dhaka City
Scientific Reports, 2024
Community engagement and social participation in dengue prevention
Health Science Reports, 2024
Health-related quality of life among thalassemia patients in Bangladesh (SF-36)
Scientific Reports, 2023
Knowledge and Attitudes towards Thalassemia among Public University Students
Microbial Bioactives, 2022
Perception of Students on Antibiotic Resistance and Prevention
European Journal of Biology and Biotechnology, 2022
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Founded & led
Initiatives
Non-profitJune 2020 – Present
CHIRAL Bangladesh
Founder & Capacity Building Director
Non-profit research institute building computational research capacity across Bangladesh and South Asia.
3,000+Researchers Trained
20+Publications
40+Conference Papers
EdTech Platform2025 – Present
DeepBio Academy
Founder & Lead Instructor
Online academy teaching bioinformatics and computational biology through expert-led, project-based courses.
500+Students
6+Courses
4.9/5Rating
Research StartupJan 2025 – Present
DeepBio Limited
Founder, CEO & Bioinformatics Scientist
AI and bioinformatics company turning multi-omics data into biomarker discovery and diagnostics for global health.
13+Team
250+Genomes
12+Services
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Updates
News
COL13A1 and COL23A1 identified as thyroid cancer biomarkers — Published in Health Science Reports. Read →
Rainbow trout RNA-Seq meta-analysis out in BMC Genomics — Conserved stress responses across four public datasets. Read →
WNT gene family in breast cancer published in Scientific Reports — Prognostic significance and immunological roles. Read →
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Training & mentorship
Open Programmes
Bioinformatics Mentorship Program
Raw sequencing data to a publication-ready manuscript, with one-to-one supervision.
Learn more →No-Code & Agentic AI
Automating literature review and omics analysis with agentic AI, without writing code.
Learn more →NextGen Drug Discovery with AI
How machine learning accelerates target identification, molecule design and virtual screening.
Learn more →GSA Bioinformatics Internship
Gain hands-on experience in bioinformatics with real-world projects and mentorship.
Learn more →AgamiAI - National AI Literacy Initiative
A national initiative to promote AI literacy and empower school and college students to leverage AI in their research and studies.
Learn more →School of Bioinformatics
Designed for school and college students, this program introduces bioinformatics concepts and practical skills.
Learn more →No matching items