Publications & Presentations

Academic contributions, research manuscripts, and conference presentations

Publications
A. Preprints (6)
PreprintBioinformaticsNeuroscience
Dosage-dependent disruption of corticofugal neuron development by Fezf2 loss
Hossain, M. J., Abhi, N. I., Islam, M. M., Das, S., Tasneem, E., & Tasnim, M.
bioRxiv (2026)
PreprintBioinformaticsSingle-CellCancer Genomics
Evaluating the false-positive rate of single-cell copy-number and malignant-cell classifiers
Hossain, M. J., & Dev, P. C.
bioRxiv (2026)
PreprintBioinformaticsImmunology
A donor-level map of immune sex differences
Hossain, M. J., Dev, P. C., Nawar, T., Arony, T. A., Hoque, M., Chowdhury, D., & Rahma, M. A.
bioRxiv (2026)
PreprintBioinformaticsCancer Genomics
Multi-cohort transcriptomic analysis reveals a convergent immune-myeloid hub associated with poor prognosis in glioblastoma
Hossain, M. J., Ahmed, E., Shafin, R. H., Islam, J., Chowdhury, M. H., Ali, M. L., Dewanjee, S., & Hosain, M. M.
bioRxiv (2026)
PreprintBioinformaticsCancer GenomicsSingle-Cell
External validation of a single-cell multi-omics target prioritization pipeline in breast cancer
Hossain, M. J., & Abhi, N. I.
bioRxiv (2026)
PreprintBioinformaticsSpatial TranscriptomicsMachine Learning
Graph Neural Network for predicting immunosuppressive spatial niches in glioblastoma from 10x Visium spatial transcriptomics
Hossain, M. J., & Dev, P. C.
bioRxiv (2026)
B. Journal Articles (16)

Peer-ReviewedBioinformatics
Integrative bioinformatics analysis reveals COL13A1 and COL23A1 as potential diagnostic and prognostic biomarkers in thyroid cancer
Islam, M. W., Rahman, M. M., Naznin, H., Hossain, M. S., Akter, T., Shatabde, Z. A., & Hossain, M. J.
Health Science Reports (2026)
Fulltext DOI
Peer-ReviewedBioinformatics
A meta-analysis of public RNA-Seq data identifies conserved stress responses in rainbow trout
Bari, S. M., Fuad, M., Hossain, M. J., Ahammad, I., Begum, M., & Helal, M. M. U.
BMC Genomics, 26, 999 (2025)
Fulltext DOI
Peer-ReviewedBioinformatics
Comprehensive bioinformatics analysis reveals prognostic significance and immunological roles of WNT gene family in breast cancer
Fariha, F. T. J., Fuad, M., Saha, C. S., Hossen, S., & Hossain, M. J.
Scientific Reports, 15, 34490 (2025)
Fulltext DOI
Peer-ReviewedInfectious Disease
Preventing the silent threat: A perspective on preparing Bangladesh for Human Metapneumovirus (HMPV)
Hossain, M. J., Sony, S. A., Fariha, F. T. J., & Hossen, S.
Health Science Reports, 8, e71101 (2025)
Fulltext DOI
Peer-ReviewedBioinformatics
Pan-cancer analysis reveals immunological and prognostic significance of CCT5 in human tumors
Ahmed, M. Z., Billah, M. M., Ferdous, J., & Hossain, M. J.
Scientific Reports, 15, 14405 (2025)
Fulltext DOI
Peer-ReviewedGlobal Health
Young stroke in Bangladesh: Addressing rare cases with diagnostic challenges
Das, M., & Hossain, M. J.
Stroke and Vascular Neurology, svn-2025-004178 (2025)
Fulltext DOI
Peer-ReviewedGlobal HealthInfectious Disease
Clinical and hematological manifestation of dengue patients in 2022 outbreak
Hossain, M. J., Das, M., Shahjahan, M., Islam, M. W., & Towhid, S. T.
Health Science Reports, 8, e70356 (2025)
Fulltext DOI
Peer-ReviewedGlobal Health
Urgent call for compulsory premarital screening for thalassemia prevention in Bangladesh
Hossain, M. J., Das, M., & Munni, U. R.
Orphanet Journal of Rare Diseases, 19, 326 (2024)
Fulltext DOI
Peer-ReviewedInfectious Disease
Resistance and co-resistance of metallo-beta-lactamase genes in diarrheal and urinary-tract pathogens
Shanta, A. S., Islam, N., Al Asad, M., Akter, K., Habib, M. B., Hossain, M. J., Nahar, S., Godman, B., & Islam, S.
Microorganisms, 12(8), 1589 (2024)
Fulltext DOI
Peer-ReviewedInfectious Disease
Prevalence, antibiotic resistance pattern for bacteriuria from patients with UTIs
Hossain, M. J., Azad, A. K., Shahid, M. S. B., Shahjahan, M., & Ferdous, J.
Health Science Reports, 7, e2039 (2024)
Fulltext DOI
Peer-ReviewedPublic Health
Food consumption patterns and sedentary behaviors among university students
Akter, M. M., & Hossain, M. J.
Health Science Reports, 7, e70259 (2024)
Fulltext DOI
Peer-ReviewedPublic Health
Factors contributing to antibiotic misuse among parents in Dhaka City
Islam, M. W., Shahjahan, M., Azad, A. K., & Hossain, M. J.
Scientific Reports, 14, 2318 (2024)
Fulltext DOI
Peer-ReviewedGlobal HealthInfectious Disease
Community engagement and social participation in dengue prevention
Hossain, M. J., Das, M., Islam, M. W., Shahjahan, M., & Ferdous, J.
Health Science Reports, 7, e2022 (2024)
Fulltext DOI
Peer-ReviewedGlobal Health
Health-related quality of life among thalassemia patients in Bangladesh (SF-36)
Hossain, M. J., Islam, M. W., Munni, U. R., Gulshan, R., Mukta, S. A., Miah, M. S., Sultana, S., Karmakar, M., Ferdous, J., & Islam, M. A.
Scientific Reports, 13(1) (2023)
Fulltext DOI
Peer-ReviewedGlobal Health
Knowledge and Attitudes towards Thalassemia among Public University Students
Hossain, M. J., Towhid, S. T., Sultana, S., Mukta, S. A., Gulshan, R., & Miah, M. S.
Microbial Bioactives, 5(2) (2022)
DOI
Peer-ReviewedPublic Health
Perception of Students on Antibiotic Resistance and Prevention
Towhid, S. T., Hossain, M. J., Sammo, M. A. S., & Akter, S.
European Journal of Biology and Biotechnology, 3(3) (2022)
DOI
C. GBD Contributions (7)
GBD Published
Global, regional, and national burden of breast cancer among females, 1990–2023, with forecasts to 2050: a systematic analysis for the Global Burden of Disease Study 2023
GBD 2023 Breast Cancer Collaborators
The Lancet Oncology (2026)
View Article
GBD Published
Global, regional, and national burden of headache disorders, 1990–2023: a systematic analysis for the Global Burden of Disease Study 2023
GBD 2023 Headache Collaborators
The Lancet Neurology (2025)
View Article
GBD Published
Global, regional, and national trends in routine childhood vaccination coverage from 1980 to 2023 with forecasts to 2030: A systematic analysis for the Global Burden of Disease Study 2023
GBD 2023 Vaccine Coverage Collaborators
The Lancet (2025)
View Article
Under Review
Global, regional, and national burden and trend of adult musculoskeletal disorders and discrepancy between pre-pandemic and pandemic of COVID-19
GBD 2021 Musculoskeletal Disorders and COVID-19 Collaborators
Submitted to BMC Medicine Under Review
Under Review
Global, regional, and national burden of tuberculosis and multidrug-resistant tuberculosis by HIV status, 1990–2023: a systematic analysis for the Global Burden of Disease Study 2023
GBD 2023 TB Collaborators
Submitted to The Lancet Infectious Diseases Under Review
Under Review
The global burden of type 1 diabetes: a systematic analysis for the Global Burden of Disease Study 2023
GBD 2023 Type 1 Diabetes Collaborators
Submitted to Under Review Under Review
Under Review
Global, regional and national burden of cervical cancer and associated risk factors from 1990 to 2023 and forecasts to 2050: A systematic analysis for the Global Burden of Disease Study 2023
GBD 2023 Cervical Cancer Collaborators
Submitted to Under Review Under Review
D. Papers Under Review (5)
Under Review
Computational identification of Taxus baccata-derived phytochemicals targeting EZH2 to overcome therapeutic resistance in melanoma
Kundu, P., Shahariar, M., Munny, F. A., Riya, A. T., Lota, H. B., Ahmed, M. Z., Meme, M. A., Kona, U. M. P., Mahmuda, F., Chowdhury, S. S., Sraboni, S. A., & Hossain, M. J.
Submitted to Scientific Reports Under Review
Under Review
Bioinformatics-driven multi-omics profiling of CDK1 and CDK6 identifies prognostic and therapeutic roles in breast cancer
Islam, M. W., Fariha, F. T. J., Ahmed, M. Z., Ferdous, J., Lota, H. B., Hossain, M. S., Kundu, P., Shahjahan, M., & Hossain, M. J.
Submitted to Health Science Reports Under Review
Under Review
Multi-omics pan-cancer analysis reveals an immunological role and prognostic potential of WDR76
Billah, M. M., Mabsurah, K., Ahammad, K., Yeana, I. J., Sumaiya, M., Islam, T., Bhattacharjee, A., Ferdous, J., & Hossain, M. J.
Submitted to Discover Oncology Under Review
Under Review
Predicting early antenatal care initiation at the first trimester among reproductive women in Bangladesh using machine learning
Sony, S. A., Kundu, L. R., Limon, M. H., Chowdhury, T. B. K., & Hossain, M. J.
Submitted to BMC Pregnancy and Childbirth Under Review
Under Review
Lack of knowledge and training about antibiotic resistance among community pharmacists in Bangladesh: a cross-sectional study
Hossain, M. J., Shahariar, M., Barsha, L. H. J., Shahjahan, M., Towhid, S. T., Sheikh, M. K., Hasan, M. M., Rahman, M. H., & Sazid, M. S.
Submitted to Health Science Reports Under Review
E. Working Papers (5)
Working Paper
Pan-Cancer Tumor-Associated Macrophage Reprogramming Atlas and Immunotherapy Response Prediction
Hossain, M. J., Shahjahan, M., & Fuad, M.
Working Paper (2026)
View
Working Paper
DeepAMR: AI-powered antimicrobial resistance prediction from genomic data
Hossain, M. J.
Working Paper (2026)
View
Working Paper
Fezf2-mediated cortical development: Multi-omics analysis
Hossain, M. J., Shahjahan, M., & Fuad, M.
Working Paper (2025)
View
Working Paper
Single-cell meta-analysis of microglial activation in Alzheimer’s disease
Hossain, M. J., Shahjahan, M., & Fuad, M.
Working Paper (2025)
View
Working Paper
Integrative spatial-scRNA-seq atlas of immunotherapy resistance mechanisms across cancer types
Hossain, M. J., Shahjahan, M., & Fuad, M.
Working Paper (2025)
View
Presentations
A. Invited Speaker (4)
Invited Speaker
Undergraduate Research - Importance, Benefits, and Challenges
CHIRAL Bangladesh · Dhaka, Bangladesh · 2019
Invited Speaker
State the Art of Microbial Genome Analysis
Jagannath University · Dhaka, Bangladesh · 2018
Invited Speaker
Computational Biology and Bioinformatics Research in Resource-Limited Settings: Strategies, Tools and Opportunities
Jagannath University Higher Study and Research Society · Dhaka, Bangladesh · 2015
Invited Speaker
Mastering Biomedical Data Management
IFMSA Bangladesh · Dhaka, Bangladesh · 2014
B. Conference Presentations (8)
Oral Presentation
Single-Cell Transcriptomic and Network Pharmacology Insights into the Therapeutic Potential of Withania somnifera-Derived Phytochemicals Against Cisplatin-Resistant Ovarian Cancer
Abhi, S. N. I., Shahriar, M., Barsha, L. H. J., Meme, M. A., & Hossain, M. J.
IEEE BECITHCON 2026 · 2026
Oral Presentation
Fezf2-Mediated Cortical Development: Multi-Omics Single-Cell Analysis
Hossain, M. J. & Islam, M. M.
Network of Young Biotechnologists Bangladesh · Dhaka, Bangladesh · 2026
Oral Presentation
Exploring the Factors Influencing Heat Stress Risks Using the Discomfort Index Method in Bangladesh
Tuhin, M. A. A., Mim, N. A., Akter, N., Jamal, F., Sakib, M. N., Mehjabin, K., & Hossain, M. J.
International Conference on Environmental Science and Resource Management (ICESRM 2024) · Bangladesh · 2024
Oral Presentation
Temporal Trends and Factors Influencing Diarrhea Prevalence Among Children in the Rangamati Hill Tract Region: A Time Series Analysis
Mim, N. A., Akter, N., Tuhin, M. A. A., Hossain, S., Alam, K. E., Mouli, N. J., & Hossain, M. J.
International Conference on Environmental Science and Resource Management (ICESRM 2024) · Bangladesh · 2024
Oral Presentation
Factors Influencing Heat Stress Risk in Bangladesh
Hossain, M. J., Habiba, U., Rozario, C., Tuhin, M. L. A., Mabsurah, K., & Uddin, N. F.
9th International Public Health Conference, Public Health Foundation at BMRC · Bangladesh · 2023
Oral Presentation
Monitoring Water-Borne Disease (Vibrio cholerae) Using NASA Earth Observation Data
Hossain, M. J., Nowshin, N., Momtaj, Yeana, I. Y., & Nohor, N.
9th International Public Health Conference, Public Health Foundation at BMRC · Bangladesh · 2023
Oral Presentation
Diagnostic and Electrophysiological Features of Hirayama Disease in Young Adult Male: A Case Report
Hossain, M. J. & Das, M.
Institute of Epidemiology, Disease Control and Research (IEDCR) · Dhaka, Bangladesh · 2020
Oral Presentation
Quantitative Microbial Risk Assessment from Vancomycin-Resistant Enterococcus faecalis and Enterococcus faecium from a Specific Neighborhood in Dhaka City, Bangladesh
Nayeem, M. U., Mrittika, M. A., Hossain, M. J., Azad, A. K., Ferdous, J., Ahmed, S., Sanyal, S. K., & Towhid, S. T.
Bangladesh Society of Microbiologists Annual Conference · Dhaka, Bangladesh · 2019
C. Posters (8)
Poster
Identification of Subtype-Specific Prognostic Biomarkers in Esophageal Carcinoma through Integrated Bioinformatics Analysis
Ahmad, F., Fuad, M., Shahjahan, M., & Hossain, M. J.
9th BSM Annual Conference · University of Dhaka, Bangladesh · 2025
Poster
Network-Driven Bioinformatics Approach Uncovers Prognostic Signatures and Therapeutic Targets in Pancreatic Ductal Adenocarcinoma
Aditee, L. M., Fuad, M., Shahjahan, M., & Hossain, M. J.
9th BSM Annual Conference · University of Dhaka, Bangladesh · 2025
Poster
Bioinformatic Analysis of Transcriptomic Data Reveals Molecular Signatures Driving Colorectal Cancer
Ahamed, M. S., Fuad, M., Shahjahan, M., & Hossain, M. J.
9th BSM Annual Conference · University of Dhaka, Bangladesh · 2025
Poster
Comparative Transcriptomic Meta-Analysis Reveals Shared and Distinct Transcriptional Networks and Pathway Crosstalk in Hepatocellular Carcinoma for Biomarker and Therapeutic Target Identification
Tabassum, R., Fuad, M., Shahjahan, M., & Hossain, M. J.
9th BSM Annual Conference · University of Dhaka, Bangladesh · 2025
Poster
Level of knowledge regarding breast cancer and breast self-examination among school and college-going girls in Bangladesh
Das, M., Kajol, M. M., Mim, N. A., Maruf, M. F. I., Hirko, K., & Hossain, M. J.
International Conference of Public Health, IEDCR · Dhaka, Bangladesh · 2024
Poster
Lack of knowledge and training about antibiotic resistance among community pharmacists in Bangladesh
Shahariar, M., Joarder Barsha, L. H., Shahjahan, M., Towhid, S. T., Sheikh, M. K., Hasan, M. M., Rahaman, M. H., Sazid, M. S., & Hossain, M. J.
International Conference of Public Health, IEDCR · Dhaka, Bangladesh · 2024
Poster
Influence of Meteorological Factors on Dengue Incidence: A 23-Year Retrospective Analysis in Bangladesh
Afrin, N., Howlader, G., Bhattacharjee, A., Akter, N., Mesu, M. H., Mazumder, E., & Hossain, M. J.
International Conference of Public Health, IEDCR · Dhaka, Bangladesh · 2024
Poster
Particulate Matter PM2.5 Pollution and Air Quality Index (AQI) Trends Evaluation with Meteorological Factors in Dhaka City
Akter, N., Mim, N. A., & Hossain, M. J.
International Conference of Public Health, IEDCR · Dhaka, Bangladesh · 2024
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